Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWY53_09000 | Not Available | Positive | 2146449 - 2148005 | 58764.0 |
| hypothetical protein | DWY53_09005 | Not Available | Positive | 2148247 - 2148513 | 10056.9 |
| hypothetical protein | DWY53_09010 | Not Available | Positive | 2148972 - 2149229 | 9880.11 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_09015 | Not Available | Negative | 2149720 - 2151654 | 71558.0 |
| tonb-dependent receptor | DWY53_09020 | Not Available | Negative | 2151669 - 2154740 | 113124.0 |
| glycoside hydrolase family 43 protein | DWY53_09025 | Not Available | Negative | 2154782 - 2156518 | 64662.4 |
| alpha-n-arabinofuranosidase | DWY53_09030 | Not Available | Negative | 2156868 - 2157839 | 36907.2 |
| endo-1,4-beta-xylanase | DWY53_09035 | Not Available | Negative | 2157852 - 2158973 | 42056.4 |
| is110 family transposase | DWY53_09040 | Not Available | Positive | 2159186 - 2160151 | 35628.5 |
| mfs transporter | DWY53_09045 | Not Available | Negative | 2160322 - 2161815 | 54449.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

