Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | DWY53_00630 | Not Available | Negative | 167021 - 167518 | 19135.2 |
| zinc abc transporter substrate-binding protein | DWY53_00635 | Not Available | Positive | 168193 - 169098 | 34053.5 |
| metal abc transporter atp-binding protein | DWY53_00640 | Not Available | Positive | 169108 - 169875 | 28695.6 |
| duf2723 domain-containing protein | DWY53_00645 | Not Available | Positive | 170336 - 173740 | 129125.0 |
| polysaccharide deacetylase family protein | DWY53_00650 | Not Available | Positive | 173811 - 174422 | 24627.9 |
| duf4861 domain-containing protein | DWY53_00655 | Not Available | Negative | 174480 - 175652 | 42906.5 |
| gluconate 5-dehydrogenase | DWY53_00660 | Not Available | Negative | 175749 - 176552 | 28590.5 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DWY53_00665 | Not Available | Negative | 176589 - 177431 | 31850.9 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | DWY53_00670 | Not Available | Negative | 177602 - 179002 | 52320.6 |
| dihydrolipoyl dehydrogenase | DWY53_00675 | Not Available | Negative | 179002 - 180342 | 47679.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

