Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtdp-glucose 4,6-dehydratase | DWY53_08145 | Not Available | Positive | 2005951 - 2007090 | 43750.0 |
| tonb-dependent receptor | DWY53_08150 | Not Available | Positive | 2007561 - 2010653 | 115070.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_08155 | Not Available | Positive | 2010666 - 2012483 | 68245.8 |
| duf4981 domain-containing protein | DWY53_08160 | Not Available | Negative | 2012670 - 2015900 | 122472.0 |
| glycoside hydrolase | DWY53_08165 | Not Available | Negative | 2015956 - 2018025 | 78010.4 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_08170 | Not Available | Negative | 2018057 - 2019592 | 58932.3 |
| dna adenine methylase | DWY53_08180 | Not Available | Negative | 2022236 - 2023096 | 33162.1 |
| thymidylate synthase | DWY53_08185 | Not Available | Negative | 2023093 - 2023731 | 24575.8 |
| hypothetical protein | DWY53_08190 | Not Available | Negative | 2023798 - 2024040 | 9288.34 |
| hypothetical protein | DWY53_08195 | Not Available | Negative | 2024226 - 2024711 | 18643.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

