Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4974 domain-containing protein | DWY53_07880 | Not Available | Negative | 1952536 - 1953618 | 41137.3 |
| sigma-70 family rna polymerase sigma factor | DWY53_07885 | Not Available | Negative | 1953831 - 1954466 | 24920.2 |
| rok family transcriptional regulator | DWY53_07890 | Not Available | Negative | 1954581 - 1955786 | 44586.1 |
| n-acetylneuraminate lyase | DWY53_07895 | Not Available | Positive | 1956092 - 1957006 | 33926.9 |
| n-acylglucosamine 2-epimerase | DWY53_07900 | Not Available | Positive | 1957019 - 1958215 | 46187.0 |
| mfs transporter | DWY53_07905 | Not Available | Positive | 1958234 - 1959481 | 45196.1 |
| glucosamine-6-phosphate deaminase | DWY53_07910 | Not Available | Positive | 1959514 - 1960305 | 29021.6 |
| glucosamine-6-phosphate deaminase | DWY53_07915 | Not Available | Positive | 1960309 - 1962297 | 74771.3 |
| tigr02757 family protein | DWY53_07920 | Not Available | Negative | 1962473 - 1963237 | 29949.8 |
| arac family transcriptional regulator | DWY53_07925 | Not Available | Negative | 1963303 - 1964181 | 34389.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

