Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | DWY53_07830 | Not Available | Negative | 1938383 - 1939189 | 30760.1 |
| tlpa family protein disulfide reductase | DWY53_07835 | Not Available | Negative | 1939196 - 1939738 | 20293.0 |
| hypothetical protein | DWY53_07840 | Not Available | Positive | 1939970 - 1940578 | 23097.2 |
| lysine--trna ligase | DWY53_07845 | Not Available | Positive | 1940653 - 1942383 | 66493.3 |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | DWY53_07850 | Not Available | Positive | 1942440 - 1943435 | 37117.2 |
| glucose-6-phosphate isomerase | DWY53_07855 | Not Available | Positive | 1943449 - 1944792 | 49105.9 |
| had family hydrolase | DWY53_07860 | Not Available | Positive | 1944942 - 1945676 | 27115.4 |
| hypothetical protein | DWY53_07865 | Not Available | Negative | 1945789 - 1947033 | 47321.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_07870 | Not Available | Negative | 1947046 - 1948635 | 60787.8 |
| susc/raga family tonb-linked outer membrane protein | DWY53_07875 | Not Available | Negative | 1948651 - 1952388 | 139679.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

