Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tryptophan synthase subunit alpha | DWY53_07780 | Not Available | Positive | 1927124 - 1927900 | 28989.2 |
| type i asparaginase | DWY53_07785 | Not Available | Positive | 1928178 - 1929221 | 38700.6 |
| dna-binding response regulator | DWY53_07790 | Not Available | Positive | 1929418 - 1930107 | 26203.9 |
| two-component sensor histidine kinase | DWY53_07795 | Not Available | Positive | 1930126 - 1931907 | 68710.7 |
| siderophore biosynthesis protein | DWY53_07800 | Not Available | Negative | 1932379 - 1933005 | 24514.3 |
| gliding motility-associated protein glde | DWY53_07805 | Not Available | Negative | 1933014 - 1934366 | 50843.5 |
| single-stranded dna-binding protein | DWY53_07810 | Not Available | Negative | 1934403 - 1934870 | 17289.3 |
| a/g-specific adenine glycosylase | DWY53_07815 | Not Available | Negative | 1934885 - 1935943 | 40541.6 |
| integration host factor subunit beta | DWY53_07820 | Not Available | Positive | 1936123 - 1936398 | 10172.4 |
| ribonuclease e/g | DWY53_07825 | Not Available | Positive | 1936637 - 1938211 | 59703.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

