Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phage holin family protein | DWY53_07675 | Not Available | Positive | 1900729 - 1901085 | 13343.2 |
| hypothetical protein | DWY53_07680 | Not Available | Positive | 1901088 - 1901387 | 11279.0 |
| peptidase s41 | DWY53_07685 | Not Available | Positive | 1901384 - 1904638 | 122695.0 |
| d-xylose transporter xyle | DWY53_07695 | Not Available | Negative | 1905817 - 1907256 | 52744.6 |
| duf1705 domain-containing protein | DWY53_07700 | Not Available | Negative | 1907307 - 1909013 | 64929.2 |
| hypothetical protein | DWY53_07705 | Not Available | Negative | 1909000 - 1910187 | 45371.2 |
| tolc family protein | DWY53_07710 | Not Available | Negative | 1910336 - 1911628 | 48422.8 |
| acrb/acrd/acrf family protein | DWY53_07715 | Not Available | Negative | 1911628 - 1914675 | 112577.0 |
| efflux rnd transporter periplasmic adaptor subunit | DWY53_07720 | Not Available | Negative | 1914694 - 1915749 | 38693.3 |
| arac family transcriptional regulator | DWY53_07725 | Not Available | Positive | 1915913 - 1916758 | 32459.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

