Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase | DWY53_07615 | Not Available | Positive | 1889144 - 1889518 | 14212.0 |
| tetr/acrr family transcriptional regulator | DWY53_07620 | Not Available | Positive | 1889921 - 1890538 | 23930.1 |
| hlyd family efflux transporter periplasmic adaptor subunit | DWY53_07630 | Not Available | Positive | 1891824 - 1892720 | 33034.6 |
| abc transporter atp-binding protein | DWY53_07635 | Not Available | Positive | 1892729 - 1894183 | 54506.0 |
| abc transporter permease | DWY53_07640 | Not Available | Positive | 1894207 - 1895313 | 41435.5 |
| abc transporter permease | DWY53_07645 | Not Available | Positive | 1895326 - 1896432 | 41634.3 |
| transaldolase | DWY53_07650 | Not Available | Positive | 1896529 - 1897185 | 23527.5 |
| glycoside hydrolase xylanase | DWY53_07660 | Not Available | Negative | 1898661 - 1899620 | 35488.6 |
| spor domain-containing protein | DWY53_07665 | Not Available | Negative | 1899746 - 1900243 | 17961.2 |
| ytxh domain-containing protein | DWY53_07670 | Not Available | Positive | 1900454 - 1900651 | 6773.24 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

