Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3868 domain-containing protein | DWY53_00525 | Not Available | Positive | 138018 - 139154 | 41767.8 |
| is1380-like element is612 family transposase | DWY53_00530 | Not Available | Positive | 139245 - 140534 | 49927.7 |
| tonb-dependent receptor | DWY53_00540 | Not Available | Positive | 140849 - 143935 | 114183.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_00545 | Not Available | Positive | 143951 - 145501 | 58639.6 |
| u32 family peptidase | DWY53_00550 | Not Available | Negative | 145780 - 147042 | 47014.9 |
| trna dihydrouridine synthase dusb | DWY53_00555 | Not Available | Positive | 147193 - 148182 | 37212.5 |
| duf2807 domain-containing protein | DWY53_00560 | Not Available | Negative | 148278 - 149129 | 29091.1 |
| phosphatase pap2 family protein | DWY53_00565 | Not Available | Negative | 149306 - 150283 | 37786.7 |
| nad(p)-dependent oxidoreductase | DWY53_00570 | Not Available | Negative | 150274 - 151320 | 40057.3 |
| cation transporter | DWY53_00575 | Not Available | Negative | 151331 - 152233 | 32907.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

