Phocaeicola vulgatus strain AF25-30LB

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF25-30LB is a Gram-positive, rod-shaped bacterium characterized by its anaerobic metabolism and mesophilic temperature range. The organism is non-motile and exists in a single-cell arrangement. It is notable for having two membranes and a single replicon, which are features often associated with certain bacterial groups. As a member of the microbiota, P. vulgatus strain AF25-30LB is host-associated, specifically found in Homo sapiens. This indicates a biotic relationship where the bacterium is free-living but thrives within the human host environment. The presence of flagella, despite the organism's non-motile nature, suggests adaptations that may play a role in its life cycle or interactions within the microbial community. Understanding the traits of P. vulgatus strain AF25-30LB is crucial, as it may contribute to the overall functionality of the gut microbiome in humans. The anaerobic nature of this bacterium suggests that it plays a role in processes such as fermentation or other metabolic pathways that require low-oxygen environments. As a free-living organism, it might also have implications for human health, particularly in maintaining gut balance or influencing immune responses. Further studies could elucidate its specific functions and interactions within the host, providing insights into its ecological role in the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF25-30LB

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF25-30LB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF25-30LB AF25-30LB.Scaf248, whole

Gene Summary

Adenine Count

1558347 bp

Thymine Count

1558364 bp

Guanine Count

1138401 bp

Cytosine Count

1152170 bp

Genome Length

5408603 bp

Protein-coding Genes

4536 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
o-acetyl-adp-ribose deacetylaseDWY53_07310Not AvailablePositive1826575 - 182720122651.2
sigma-54-dependent fis family transcriptional regulatorDWY53_07315Not AvailableNegative1827591 - 182892849964.5
glycine betaine/l-proline abc transporter atp-binding proteinDWY53_07320Not AvailablePositive1829230 - 183045645636.3
proline/glycine betaine abc transporter permeaseDWY53_07325Not AvailablePositive1830453 - 183127729538.8
glycine/betaine abc transporter substrate-binding proteinDWY53_07330Not AvailablePositive1831280 - 183212231666.2
dmt family transporterDWY53_07335Not AvailablePositive1832267 - 183317534069.1
sugar o-acetyltransferaseDWY53_07340Not AvailablePositive1833188 - 183373920098.3
hypothetical proteinDWY53_07345Not AvailableNegative1833799 - 18340178234.71
type i methionyl aminopeptidaseDWY53_07350Not AvailablePositive1834254 - 183510831838.1
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsadDWY53_07355Not AvailablePositive1835132 - 183615136941.3

Displaying genes 1441 – 1450 of 4643 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.