Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-fucose isomerase | DWY53_07145 | Not Available | Negative | 1782710 - 1784485 | 65638.0 |
| gntr family transcriptional regulator | DWY53_07150 | Not Available | Negative | 1784507 - 1785487 | 38068.7 |
| hypothetical protein | DWY53_07155 | Not Available | Negative | 1785663 - 1785869 | 7450.12 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | DWY53_07160 | Not Available | Positive | 1785936 - 1787450 | 55822.0 |
| duf3109 family protein | DWY53_07165 | Not Available | Positive | 1787553 - 1788134 | 22164.6 |
| hypothetical protein | DWY53_07170 | Not Available | Positive | 1788202 - 1789389 | 44408.7 |
| alpha-amylase | DWY53_07185 | Not Available | Negative | 1792659 - 1795238 | 97647.7 |
| duf5115 domain-containing protein | DWY53_07190 | Not Available | Negative | 1795328 - 1796743 | 51573.5 |
| susf/suse family outer membrane protein | DWY53_07195 | Not Available | Negative | 1796767 - 1797903 | 41569.2 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_07200 | Not Available | Negative | 1797932 - 1799626 | 63567.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

