Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWY53_00470 | Not Available | Negative | 116760 - 118259 | 55427.2 |
| tonb-dependent receptor | DWY53_00475 | Not Available | Negative | 118285 - 121359 | 113229.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_00480 | Not Available | Negative | 121571 - 123016 | 54470.2 |
| tonb-dependent receptor | DWY53_00485 | Not Available | Negative | 123038 - 126157 | 115362.0 |
| beta-galactosidase | DWY53_00495 | Not Available | Negative | 128115 - 132395 | 162293.0 |
| xre family transcriptional regulator | DWY53_00500 | Not Available | Negative | 132484 - 132786 | 11077.2 |
| type ii toxin-antitoxin system rele/pare family toxin | DWY53_00505 | Not Available | Negative | 132758 - 133099 | 13792.8 |
| hypothetical protein | DWY53_00510 | Not Available | Negative | 133245 - 135863 | 98552.3 |
| site-specific integrase | DWY53_00515 | Not Available | Positive | 136146 - 137075 | 35829.5 |
| duf3575 domain-containing protein | DWY53_00520 | Not Available | Positive | 137423 - 137989 | 21274.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

