Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | DWY53_06945 | Not Available | Positive | 1732714 - 1735617 | 111237.0 |
| tonb-dependent receptor | DWY53_06950 | Not Available | Positive | 1735641 - 1737338 | 64322.7 |
| type i dna topoisomerase | DWY53_06955 | Not Available | Positive | 1737460 - 1739898 | 91433.3 |
| shikimate kinase | DWY53_06960 | Not Available | Positive | 1739895 - 1740422 | 20453.7 |
| biosynthetic arginine decarboxylase | DWY53_06965 | Not Available | Positive | 1740464 - 1742356 | 71492.0 |
| acetylglutamate kinase | DWY53_06970 | Not Available | Positive | 1742361 - 1743134 | 27207.2 |
| rna polymerase sigma factor | DWY53_06975 | Not Available | Positive | 1743198 - 1743707 | 20158.2 |
| hypothetical protein | DWY53_06980 | Not Available | Positive | 1743697 - 1744176 | 18339.8 |
| duf2807 domain-containing protein | DWY53_06985 | Not Available | Negative | 1744374 - 1745105 | 25978.6 |
| m48 family peptidase | DWY53_06990 | Not Available | Positive | 1745212 - 1745916 | 27306.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

