Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWY53_06625 | Not Available | Negative | 1668627 - 1670255 | 62488.4 |
| susc/raga family tonb-linked outer membrane protein | DWY53_06630 | Not Available | Negative | 1670268 - 1673570 | 121136.0 |
| fecr family protein | DWY53_06635 | Not Available | Negative | 1673808 - 1674803 | 38504.3 |
| rna polymerase sigma-70 factor | DWY53_06640 | Not Available | Negative | 1674862 - 1675470 | 24004.0 |
| nadp-dependent malic enzyme | DWY53_06645 | Not Available | Positive | 1676122 - 1678407 | 84197.2 |
| hypothetical protein | DWY53_06650 | Not Available | Positive | 1678536 - 1678718 | 6713.74 |
| nadp-specific glutamate dehydrogenase | DWY53_06655 | Not Available | Positive | 1678873 - 1680207 | 48972.7 |
| hypothetical protein | DWY53_06660 | Not Available | Positive | 1680363 - 1681511 | 42381.6 |
| port family protein | DWY53_06665 | Not Available | Positive | 1681520 - 1682296 | 29116.1 |
| duf4925 domain-containing protein | DWY53_06670 | Not Available | Negative | 1683153 - 1684349 | 43393.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

