Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-dehydroquinate synthase | DWY53_06005 | Not Available | Positive | 1500691 - 1501752 | 39850.1 |
| arac family transcriptional regulator | DWY53_06010 | Not Available | Positive | 1502026 - 1502886 | 34056.9 |
| Trna-pro | Not Available | Not Available | Positive | 1502987 - 1503064 | Not Available |
| dna polymerase iv | DWY53_06020 | Not Available | Positive | 1503326 - 1504420 | 41305.8 |
| adp-ribosylglycohydrolase | DWY53_06025 | Not Available | Negative | 1504401 - 1505189 | 29919.8 |
| 2,3-diphosphoglycerate-dependent phosphoglycerate mutase | DWY53_06030 | Not Available | Positive | 1505353 - 1506114 | 29086.8 |
| class i fructose-bisphosphate aldolase | DWY53_06035 | Not Available | Positive | 1506265 - 1507317 | 38049.5 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | DWY53_06040 | Not Available | Positive | 1507479 - 1508705 | 45914.5 |
| phospholipase | DWY53_06045 | Not Available | Positive | 1508710 - 1509129 | 15918.1 |
| metal abc transporter permease | DWY53_06050 | Not Available | Positive | 1509182 - 1510033 | 31184.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

