Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWY53_05850 | Not Available | Positive | 1465550 - 1466008 | 17637.3 |
| hsp20/alpha crystallin family protein | DWY53_05855 | Not Available | Positive | 1466273 - 1466716 | 16943.0 |
| nucleoside deaminase | DWY53_05865 | Not Available | Positive | 1467280 - 1467747 | 16967.2 |
| aminoacyl-histidine dipeptidase | DWY53_05870 | Not Available | Negative | 1467809 - 1469269 | 53173.6 |
| upf0104 family protein | DWY53_05875 | Not Available | Negative | 1469266 - 1470270 | 37225.6 |
| ribosomal rna small subunit methyltransferase a | DWY53_05880 | Not Available | Positive | 1470369 - 1471211 | 31940.9 |
| magnesium transporter | DWY53_05885 | Not Available | Positive | 1471243 - 1472583 | 49694.8 |
| duf349 domain-containing protein | DWY53_05890 | Not Available | Positive | 1472844 - 1474652 | 70109.0 |
| Trna-gln | Not Available | Not Available | Positive | 1474807 - 1474877 | Not Available |
| ribosome silencing factor | DWY53_05900 | Not Available | Positive | 1475198 - 1475557 | 13409.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

