Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endonuclease | DWY53_05800 | Not Available | Positive | 1454802 - 1455863 | 40748.7 |
| hybrid sensor histidine kinase/response regulator | DWY53_05805 | Not Available | Negative | 1455868 - 1457007 | 42228.6 |
| sdr family oxidoreductase | DWY53_05810 | Not Available | Negative | 1457017 - 1457955 | 35502.6 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | DWY53_05815 | Not Available | Positive | 1458076 - 1458900 | 29140.4 |
| [acyl-carrier-protein] s-malonyltransferase | DWY53_05820 | Not Available | Positive | 1459027 - 1459914 | 31271.7 |
| phospholipase | DWY53_05825 | Not Available | Positive | 1460040 - 1460825 | 29386.5 |
| alpha-amylase | DWY53_05830 | Not Available | Positive | 1460842 - 1462539 | 64755.7 |
| hpaii family restriction endonuclease | DWY53_05835 | Not Available | Negative | 1462668 - 1463756 | 41371.0 |
| hypothetical protein | DWY53_05840 | Not Available | Positive | 1463859 - 1464098 | 9468.92 |
| linear amide c-n hydrolase | DWY53_05845 | Not Available | Positive | 1464257 - 1465315 | 39405.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

