Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gdp-l-fucose synthase | DWY53_05600 | Not Available | Negative | 1409746 - 1410822 | 40512.6 |
| gdp-mannose 4,6-dehydratase | DWY53_05605 | Not Available | Negative | 1410822 - 1411904 | 41218.5 |
| mannose-1-phosphate guanylyltransferase | DWY53_05610 | Not Available | Negative | 1412080 - 1413144 | 40506.4 |
| undecaprenyl-phosphate glucose phosphotransferase | DWY53_05615 | Not Available | Positive | 1413258 - 1414661 | 54181.0 |
| glucose-1-phosphate thymidylyltransferase | DWY53_05620 | Not Available | Positive | 1414697 - 1415584 | 32737.7 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | DWY53_05625 | Not Available | Positive | 1415584 - 1416153 | 21738.7 |
| chain-length determining protein | DWY53_05630 | Not Available | Negative | 1416329 - 1417468 | 41468.8 |
| capsule biosynthesis protein | DWY53_05635 | Not Available | Negative | 1417476 - 1419968 | 92297.4 |
| xylose isomerase | DWY53_05640 | Not Available | Negative | 1420209 - 1421525 | 49038.9 |
| carbohydrate kinase | DWY53_05645 | Not Available | Negative | 1421618 - 1423111 | 53461.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

