Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DWY53_05340 | Not Available | Negative | 1348951 - 1352304 | 124383.0 |
| fecr family protein | DWY53_05345 | Not Available | Negative | 1352457 - 1353392 | 36601.0 |
| rna polymerase sigma-70 factor | DWY53_05350 | Not Available | Negative | 1353447 - 1354037 | 23832.7 |
| Trna-met | Not Available | Not Available | Positive | 1354373 - 1354448 | Not Available |
| tetr/acrr family transcriptional regulator | DWY53_05360 | Not Available | Positive | 1354680 - 1355279 | 22662.3 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | DWY53_05365 | Not Available | Positive | 1355311 - 1356057 | 25964.4 |
| rna pseudouridine synthase | DWY53_05370 | Not Available | Positive | 1356059 - 1356730 | 25577.9 |
| hypothetical protein | DWY53_05375 | Not Available | Negative | 1356795 - 1357100 | 10828.8 |
| sigma-54-dependent fis family transcriptional regulator | DWY53_05380 | Not Available | Negative | 1357385 - 1358767 | 51210.5 |
| response regulator | DWY53_05385 | Not Available | Negative | 1358869 - 1361436 | 96942.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

