Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DWY53_05080 | Not Available | Positive | 1284076 - 1285266 | 44503.8 |
| hypothetical protein | DWY53_05085 | Not Available | Positive | 1285992 - 1286290 | 11368.3 |
| abc transporter atp-binding protein | DWY53_05090 | Not Available | Negative | 1286355 - 1287119 | 28911.9 |
| abc transporter permease | DWY53_05095 | Not Available | Negative | 1287116 - 1287859 | 27369.4 |
| lps export abc transporter atp-binding protein | DWY53_05100 | Not Available | Positive | 1287988 - 1288809 | 30965.2 |
| rna-binding protein | DWY53_05105 | Not Available | Negative | 1288886 - 1289131 | 9049.81 |
| trigger factor | DWY53_05110 | Not Available | Positive | 1289513 - 1290868 | 51528.8 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | DWY53_05115 | Not Available | Positive | 1291049 - 1291720 | 24864.8 |
| atp-dependent clp protease atp-binding subunit clpx | DWY53_05120 | Not Available | Positive | 1291844 - 1293094 | 46679.9 |
| dna helicase recq | DWY53_05125 | Not Available | Positive | 1293252 - 1295432 | 81679.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

