Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yegs/rv2252/bmru family lipid kinase | DWY53_05030 | Not Available | Positive | 1272138 - 1273067 | 35331.0 |
| 3-deoxy-8-phosphooctulonate synthase | DWY53_05035 | Not Available | Positive | 1273140 - 1273937 | 28835.3 |
| ferritin | DWY53_05040 | Not Available | Negative | 1274098 - 1274610 | 19740.4 |
| ccoq/fixq family cbb3-type cytochrome c oxidase assembly chaperone | DWY53_05045 | Not Available | Negative | 1274643 - 1274795 | 5511.84 |
| crp/fnr family transcriptional regulator | DWY53_05050 | Not Available | Negative | 1274925 - 1275626 | 26605.4 |
| glutamine synthetase type iii | DWY53_05055 | Not Available | Negative | 1275787 - 1277976 | 82847.0 |
| hypothetical protein | DWY53_05060 | Not Available | Positive | 1278152 - 1280350 | 86208.9 |
| tolc family protein | DWY53_05065 | Not Available | Positive | 1280413 - 1281846 | 53905.0 |
| biotin/lipoyl-binding protein | DWY53_05070 | Not Available | Positive | 1281864 - 1282859 | 36927.8 |
| abc transporter permease | DWY53_05075 | Not Available | Positive | 1282920 - 1284092 | 43620.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

