Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolc family protein | DWY53_04980 | Not Available | Negative | 1258620 - 1260077 | 54862.1 |
| hydrophobe/amphiphile efflux-1 family rnd transporter | DWY53_04985 | Not Available | Negative | 1260055 - 1263204 | 115634.0 |
| efflux rnd transporter periplasmic adaptor subunit | DWY53_04990 | Not Available | Negative | 1263217 - 1264368 | 43842.2 |
| hypothetical protein | DWY53_04995 | Not Available | Negative | 1264491 - 1264913 | 16008.7 |
| aminopeptidase p family protein | DWY53_05000 | Not Available | Positive | 1265030 - 1266190 | 42418.8 |
| glutamine-hydrolyzing gmp synthase | DWY53_05005 | Not Available | Negative | 1266347 - 1267654 | 48297.4 |
| gmp synthase (glutamine-hydrolyzing) | DWY53_05010 | Not Available | Negative | 1267693 - 1269246 | 57645.2 |
| large conductance mechanosensitive channel protein mscl | DWY53_05015 | Not Available | Negative | 1269485 - 1269925 | 15733.6 |
| type i glyceraldehyde-3-phosphate dehydrogenase | DWY53_05020 | Not Available | Positive | 1270077 - 1271087 | 35961.1 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | DWY53_05025 | Not Available | Positive | 1271209 - 1272132 | 35776.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

