Phocaeicola vulgatus strain AF25-30LB

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF25-30LB is a Gram-positive, rod-shaped bacterium that typically exists as single cells and is classified as an anaerobe, indicating its growth occurs in environments devoid of oxygen. This strain is host-associated, suggesting a relationship with a specific host organism, though the nature of this association is not detailed in the available data. The rod shape and anaerobic nature of P. vulgatus AF25-30LB may contribute to its ecological niche within the host's microbiome, where it could play a role in various metabolic processes. Anaerobic bacteria often participate in fermentation pathways, which can influence nutrient absorption and overall gut health in host organisms. Moreover, the presence of P. vulgatus in host-associated environments may indicate its potential involvement in the maintenance of microbial community stability or in the competition with other microbial species. The solitary arrangement of cells may also suggest a strategy for survival in specific microenvironments within the host, where competition for resources can be intense. Overall, P. vulgatus strain AF25-30LB exemplifies the diversity of microbial life and its adaptive strategies within host-associated habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF25-30LB
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF25-30LB

Accession NumberQRUD00000000.1

Gene Summary

Adenine Count

1558347 bp

Thymine Count

1558364 bp

Guanine Count

1138401 bp

Cytosine Count

1152170 bp

Genome Length

5408603 bp

Protein-coding Genes

4536 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+2685295 - 2685307Not Available
Putative translation initiation factorDWY53_11275Not Available+2688109 - 268889129464.9
Hypothetical proteinDWY53_11280Not Available+2688888 - 268980835189.7
Single stranded dna binding proteinDWY53_11285Not Available+2689795 - 269017214007.7
Putative dna base-flipping proteinDWY53_11290Not Available+2690172 - 269062417341.8
hypothetical proteinDWY53_11295Not Available+2690648 - 269134926802.1
hnh endonucleaseDWY53_11300Not Available+2691349 - 269162410686.2
1_nc_021788: helicaseDWY53_11305Not Available+2691621 - 269277843764.6
Putative endodeoxyribonucleaseDWY53_11310Not Available+2692781 - 269315514823.0
RecombinaseDWY53_11315Not Available+2693167 - 269351713569.8

Displaying genes 1 – 10 of 4643 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites