Phocaeicola vulgatus strain AF29-13

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF29-13 is a Gram-positive, rod-shaped bacterium that exists as single cells and is classified as an anaerobe, indicating its reliance on environments devoid of oxygen for growth. This strain is host-associated, suggesting a symbiotic or commensal relationship with a specific host organism, though the precise nature of this association is not detailed in the provided traits. As a member of the genus Phocaeicola, strain AF29-13 is expected to contribute to complex microbial communities, potentially playing a role in nutrient cycling or metabolic processes within its host's microbiome. The anaerobic nature of this strain may also suggest adaptations that allow it to thrive in low-oxygen environments typically found in certain gastrointestinal tracts or other host-associated niches. Further studies could elucidate the specific metabolic pathways utilized by Phocaeicola vulgatus strain AF29-13, which may provide insights into its functional role within its habitat. Understanding the interactions between this bacterium and its host may also reveal important aspects of microbial ecology and host health, particularly in the context of anaerobic microbial diversity and function.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF29-13
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF29-13

Accession NumberQRSX00000000.1

Gene Summary

Adenine Count

1434359 bp

Thymine Count

1406831 bp

Guanine Count

1033248 bp

Cytosine Count

1035378 bp

Genome Length

4910436 bp

Protein-coding Genes

3936 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinDWZ06_00005Not Available+1 - 1896617.96
low specificity l-threonine aldolaseDWZ06_00010Not Available-208 - 122437832.5
tonb-dependent receptorDWZ06_00015Not Available+1390 - 4155104480.0
hypothetical proteinDWZ06_00020Not Available+4192 - 576956712.6
mannose-6-phosphate isomeraseDWZ06_00025Not Available+5883 - 685436186.5
Ncrna_class:rnase_p_rnaNot AvailableNot Available+7273 - 7642Not Available
lactonase family proteinDWZ06_00030Not Available-6946 - 811242758.9
Tmrna,resume consensus sequence (at 89): tttatctggcaacgaaaaNot AvailableNot Available+8253 - 8647Not Available
alpha-l-fucosidaseDWZ06_00040Not Available-8828 - 1015350388.9
gtp-binding proteinDWZ06_00045Not Available+10302 - 1155247753.1

Displaying genes 1 – 10 of 4010 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites