Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator | DWZ06_04995 | Not Available | Positive | 1179470 - 1179853 | 15088.3 |
| hypothetical protein | DWZ06_05000 | Not Available | Positive | 1179837 - 1180136 | 11204.8 |
| atp-binding protein | DWZ06_05005 | Not Available | Positive | 1180496 - 1181431 | 34599.0 |
| hnh endonuclease | DWZ06_05010 | Not Available | Positive | 1181418 - 1182236 | 31596.9 |
| hypothetical protein | DWZ06_05015 | Not Available | Positive | 1182236 - 1182661 | 16611.0 |
| hypothetical protein | DWZ06_05020 | Not Available | Positive | 1182661 - 1183305 | 23797.1 |
| dead/deah box helicase | DWZ06_05025 | Not Available | Positive | 1183302 - 1184996 | 64647.2 |
| vrr-nuc domain-containing protein | DWZ06_05030 | Not Available | Positive | 1184993 - 1185355 | 13929.9 |
| hypothetical protein | DWZ06_05040 | Not Available | Positive | 1186154 - 1186807 | 24401.1 |
| hypothetical protein | DWZ06_05045 | Not Available | Positive | 1186839 - 1187258 | 15765.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

