Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crossover junction endodeoxyribonuclease ruvc | DWZ06_04945 | Not Available | Negative | 1173658 - 1174227 | 21117.3 |
| duf4286 family protein | DWZ06_04950 | Not Available | Negative | 1174224 - 1174529 | 11925.3 |
| hypothetical protein | DWZ06_04955 | Not Available | Negative | 1175070 - 1175312 | 8924.15 |
| hypothetical protein | DWZ06_04960 | Not Available | Negative | 1175452 - 1175694 | 9001.03 |
| hypothetical protein | DWZ06_04965 | Not Available | Negative | 1176019 - 1176414 | 14784.0 |
| s24 family peptidase | DWZ06_04970 | Not Available | Negative | 1176436 - 1177131 | 25647.0 |
| hypothetical protein | DWZ06_04975 | Not Available | Negative | 1177315 - 1177722 | 14697.4 |
| hypothetical protein | DWZ06_04980 | Not Available | Positive | 1177885 - 1178169 | 11091.2 |
| hypothetical protein | DWZ06_04985 | Not Available | Positive | 1179038 - 1179265 | 8859.76 |
| hypothetical protein | DWZ06_04990 | Not Available | Positive | 1179267 - 1179473 | 7794.56 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

