Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4293 family protein | DWZ06_04895 | Not Available | Negative | 1161438 - 1161890 | 16883.5 |
| rna polymerase rpb6 | DWZ06_04900 | Not Available | Negative | 1162140 - 1162475 | 12965.3 |
| outer membrane protein assembly factor bamd | DWZ06_04905 | Not Available | Negative | 1162492 - 1163328 | 32450.3 |
| excinuclease abc subunit uvrb | DWZ06_04910 | Not Available | Positive | 1163494 - 1165527 | 77715.7 |
| porin | DWZ06_04915 | Not Available | Negative | 1165694 - 1166707 | 38665.0 |
| yigz family protein | DWZ06_04920 | Not Available | Negative | 1166898 - 1167500 | 22823.7 |
| exonuclease | DWZ06_04925 | Not Available | Negative | 1167534 - 1168022 | 18589.9 |
| patatin | DWZ06_04930 | Not Available | Positive | 1168230 - 1170440 | 81907.4 |
| mannonate dehydratase | DWZ06_04935 | Not Available | Negative | 1170423 - 1171601 | 44739.9 |
| type i pullulanase | DWZ06_04940 | Not Available | Negative | 1171659 - 1173653 | 74611.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

