Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| winged helix family transcriptional regulator | DWZ06_04745 | Not Available | Positive | 1129132 - 1130094 | 37688.8 |
| mbl fold metallo-hydrolase | DWZ06_04750 | Not Available | Positive | 1130248 - 1131051 | 29886.9 |
| Trna-lys | Not Available | Not Available | Positive | 1131140 - 1131215 | Not Available |
| Trna-lys | Not Available | Not Available | Positive | 1131237 - 1131312 | Not Available |
| Trna-lys | Not Available | Not Available | Positive | 1131330 - 1131405 | Not Available |
| hypothetical protein | DWZ06_04770 | Not Available | Negative | 1131536 - 1131754 | 8572.49 |
| hypothetical protein | DWZ06_04775 | Not Available | Negative | 1132216 - 1132800 | 21939.4 |
| hypothetical protein | DWZ06_04780 | Not Available | Negative | 1132853 - 1133101 | 9624.58 |
| hypothetical protein | DWZ06_04785 | Not Available | Negative | 1133118 - 1135442 | 89004.4 |
| rna methyltransferase | DWZ06_04790 | Not Available | Positive | 1135544 - 1136299 | 27943.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

