Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| precorrin-4 c(11)-methyltransferase | DWZ06_04695 | Not Available | Positive | 1116304 - 1118115 | 67020.4 |
| cobalt-precorrin-5b (c(1))-methyltransferase | DWZ06_04700 | Not Available | Positive | 1118141 - 1119937 | 66015.2 |
| abc transporter atp-binding protein | DWZ06_04705 | Not Available | Negative | 1119959 - 1120978 | 37541.6 |
| iron abc transporter permease | DWZ06_04710 | Not Available | Negative | 1120981 - 1122018 | 36729.8 |
| iron abc transporter substrate-binding protein | DWZ06_04715 | Not Available | Negative | 1122030 - 1123181 | 43275.9 |
| precorrin-2 c(20)-methyltransferase | DWZ06_04720 | Not Available | Positive | 1123285 - 1124013 | 27466.2 |
| hypothetical protein | DWZ06_04725 | Not Available | Negative | 1123976 - 1124389 | 15741.7 |
| tagaturonate reductase | DWZ06_04730 | Not Available | Negative | 1124491 - 1125930 | 53907.1 |
| uronate isomerase | DWZ06_04735 | Not Available | Positive | 1126256 - 1127662 | 54309.7 |
| tlpa family protein disulfide reductase | DWZ06_04740 | Not Available | Negative | 1127751 - 1128950 | 46074.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

