Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | DWZ06_04640 | Not Available | Positive | 1103870 - 1105027 | 43496.5 |
| 1-deoxy-d-xylulose-5-phosphate synthase | DWZ06_04645 | Not Available | Negative | 1105135 - 1106895 | 64568.6 |
| arac family transcriptional regulator | DWZ06_04650 | Not Available | Negative | 1107082 - 1107969 | 34077.2 |
| arac family transcriptional regulator | DWZ06_04655 | Not Available | Negative | 1108001 - 1108909 | 35404.4 |
| gnat family n-acetyltransferase | DWZ06_04665 | Not Available | Positive | 1109580 - 1110380 | 30582.8 |
| duf1016 family protein | DWZ06_04670 | Not Available | Positive | 1110527 - 1111630 | 42588.9 |
| flavodoxin | DWZ06_04675 | Not Available | Positive | 1111930 - 1112466 | 19869.9 |
| flavin reductase family protein | DWZ06_04680 | Not Available | Positive | 1112472 - 1113032 | 20230.2 |
| precorrin-3b c(17)-methyltransferase | DWZ06_04685 | Not Available | Positive | 1113690 - 1115096 | 51753.8 |
| bifunctional cobalt-precorrin-7 (c(5))-methyltransferase/cobalt-precorrin-6b (c(15))-methyltransferase | DWZ06_04690 | Not Available | Positive | 1115101 - 1116282 | 44294.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

