Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | DWZ06_00410 | Not Available | Positive | 103618 - 104748 | 43083.9 |
| ntpase | DWZ06_00415 | Not Available | Positive | 104765 - 108019 | 124234.0 |
| conjugal transfer protein trag | DWZ06_00420 | Not Available | Negative | 108151 - 110169 | 77090.4 |
| relaxase | DWZ06_00425 | Not Available | Negative | 110200 - 111447 | 46565.8 |
| moba protein | DWZ06_00430 | Not Available | Negative | 111426 - 111854 | 16824.5 |
| hypothetical protein | DWZ06_00440 | Not Available | Negative | 112132 - 112311 | 6265.64 |
| para family protein | DWZ06_00450 | Not Available | Positive | 112544 - 113299 | 28281.3 |
| duf3408 domain-containing protein | DWZ06_00455 | Not Available | Positive | 113305 - 113754 | 17005.1 |
| duf3408 domain-containing protein | DWZ06_00460 | Not Available | Positive | 113778 - 114140 | 13998.7 |
| conjugal transfer protein trad | DWZ06_00465 | Not Available | Positive | 114137 - 114877 | 27973.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

