Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa carboxylase subunit beta | DWZ06_04590 | Not Available | Positive | 1089138 - 1090346 | 43932.9 |
| putative transporter | DWZ06_04595 | Not Available | Positive | 1090472 - 1092160 | 60888.9 |
| hypothetical protein | DWZ06_04600 | Not Available | Positive | 1092180 - 1092737 | 21451.8 |
| hypothetical protein | DWZ06_04605 | Not Available | Positive | 1092764 - 1092973 | 7700.39 |
| ribonucleoside-diphosphate reductase subunit alpha | DWZ06_04610 | Not Available | Positive | 1093376 - 1095895 | 95790.6 |
| ribonucleotide-diphosphate reductase subunit beta | DWZ06_04615 | Not Available | Positive | 1096058 - 1097107 | 41347.9 |
| methylenetetrahydrofolate reductase | DWZ06_04620 | Not Available | Negative | 1097198 - 1098151 | 35944.1 |
| tonb-dependent receptor | DWZ06_04625 | Not Available | Negative | 1098448 - 1100751 | 85921.1 |
| hypothetical protein | DWZ06_04630 | Not Available | Negative | 1100860 - 1101240 | 13813.3 |
| tonb-dependent receptor | DWZ06_04635 | Not Available | Positive | 1101679 - 1103856 | 81281.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

