Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucosamine-6-phosphate deaminase | DWZ06_04540 | Not Available | Negative | 1074570 - 1075361 | 29021.6 |
| mfs transporter | DWZ06_04545 | Not Available | Negative | 1075407 - 1076642 | 44685.5 |
| n-acylglucosamine 2-epimerase | DWZ06_04550 | Not Available | Negative | 1076661 - 1077857 | 46213.1 |
| n-acetylneuraminate lyase | DWZ06_04555 | Not Available | Negative | 1077870 - 1078784 | 33926.9 |
| rok family transcriptional regulator | DWZ06_04560 | Not Available | Positive | 1079090 - 1080295 | 44586.1 |
| sigma-70 family rna polymerase sigma factor | DWZ06_04565 | Not Available | Positive | 1080410 - 1081045 | 24920.2 |
| duf4974 domain-containing protein | DWZ06_04570 | Not Available | Positive | 1081258 - 1082340 | 41095.2 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_04575 | Not Available | Positive | 1082488 - 1086225 | 139678.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_04580 | Not Available | Positive | 1086241 - 1087830 | 60787.8 |
| hypothetical protein | DWZ06_04585 | Not Available | Positive | 1087843 - 1089087 | 47321.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

