Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | DWZ06_04490 | Not Available | Negative | 1062293 - 1062766 | 19000.9 |
| hypothetical protein | DWZ06_04495 | Not Available | Negative | 1062918 - 1063589 | 25581.6 |
| hypothetical protein | DWZ06_04500 | Not Available | Positive | 1063909 - 1064028 | 4138.87 |
| dna-binding protein | DWZ06_04505 | Not Available | Positive | 1063994 - 1064698 | 27007.7 |
| tolc family protein | DWZ06_04510 | Not Available | Negative | 1064913 - 1066292 | 51471.9 |
| acrb/acrd/acrf family protein | DWZ06_04515 | Not Available | Negative | 1066325 - 1069450 | 115862.0 |
| efflux rnd transporter periplasmic adaptor subunit | DWZ06_04520 | Not Available | Negative | 1069450 - 1070517 | 39261.3 |
| arac family transcriptional regulator | DWZ06_04525 | Not Available | Positive | 1070694 - 1071572 | 34389.8 |
| tigr02757 family protein | DWZ06_04530 | Not Available | Positive | 1071638 - 1072402 | 29921.8 |
| glucosamine-6-phosphate deaminase | DWZ06_04535 | Not Available | Negative | 1072578 - 1074566 | 74771.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

