Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 2 protein | DWZ06_04440 | Not Available | Positive | 1045424 - 1047991 | 98692.7 |
| beta-n-acetylhexosaminidase | DWZ06_04445 | Not Available | Positive | 1048008 - 1050332 | 86342.9 |
| cyclically-permuted mutarotase family protein | DWZ06_04450 | Not Available | Positive | 1050519 - 1051646 | 40537.6 |
| beta-n-acetylhexosaminidase | DWZ06_04455 | Not Available | Positive | 1051643 - 1053697 | 77175.9 |
| glycoside hydrolase family 92 protein | DWZ06_04460 | Not Available | Positive | 1053724 - 1055976 | 85514.6 |
| duf4982 domain-containing protein | DWZ06_04465 | Not Available | Positive | 1055979 - 1058483 | 94078.9 |
| n-acetylglucosamine-6-phosphate deacetylase | DWZ06_04470 | Not Available | Positive | 1058659 - 1059822 | 42267.2 |
| atp-binding cassette domain-containing protein | DWZ06_04475 | Not Available | Negative | 1060046 - 1060699 | 24548.9 |
| hypothetical protein | DWZ06_04480 | Not Available | Negative | 1060696 - 1061625 | 35574.4 |
| hypothetical protein | DWZ06_04485 | Not Available | Negative | 1061702 - 1062280 | 22985.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

