Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lps-assembly protein lptd | DWZ06_04390 | Not Available | Positive | 1028859 - 1031594 | 103894.0 |
| uracil-dna glycosylase | DWZ06_04395 | Not Available | Negative | 1031684 - 1032346 | 24957.5 |
| aspartate--ammonia ligase | DWZ06_04400 | Not Available | Negative | 1032464 - 1033504 | 39770.2 |
| Trna-arg | Not Available | Not Available | Positive | 1033707 - 1033781 | Not Available |
| tonb-dependent receptor | DWZ06_04410 | Not Available | Positive | 1034090 - 1037365 | 121640.0 |
| susd family outer membrane lipoprotein nanu | DWZ06_04415 | Not Available | Positive | 1037385 - 1038887 | 56986.5 |
| sialidase | DWZ06_04420 | Not Available | Positive | 1039020 - 1040660 | 60315.2 |
| beta-n-acetylhexosaminidase | DWZ06_04425 | Not Available | Positive | 1040664 - 1042670 | 77065.5 |
| sialate o-acetylesterase | DWZ06_04430 | Not Available | Positive | 1042672 - 1043337 | 25159.8 |
| sialate o-acetylesterase | DWZ06_04435 | Not Available | Positive | 1043334 - 1045397 | 77619.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

