Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| restriction endonuclease subunit s | DWZ06_04340 | Not Available | Negative | 1016520 - 1017710 | 44721.7 |
| hypothetical protein | DWZ06_04345 | Not Available | Negative | 1018451 - 1018645 | 7641.39 |
| cell surface protein | DWZ06_04350 | Not Available | Positive | 1019657 - 1022491 | 98214.3 |
| pqqd family protein | DWZ06_04355 | Not Available | Positive | 1022604 - 1022873 | 10032.2 |
| hypothetical protein | DWZ06_04360 | Not Available | Positive | 1022911 - 1023996 | 41253.2 |
| abc transporter atp-binding protein | DWZ06_04365 | Not Available | Positive | 1024004 - 1025656 | 61654.1 |
| hypothetical protein | DWZ06_04370 | Not Available | Positive | 1025640 - 1026554 | 33769.3 |
| s26 family signal peptidase | DWZ06_04375 | Not Available | Positive | 1026523 - 1026990 | 18041.4 |
| duf1343 domain-containing protein | DWZ06_04380 | Not Available | Negative | 1027018 - 1028178 | 43551.8 |
| hdig domain-containing protein | DWZ06_04385 | Not Available | Positive | 1028232 - 1028768 | 20311.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

