Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_04280 | Not Available | Negative | 1001382 - 1001669 | 10650.0 |
| alpha/beta hydrolase | DWZ06_04285 | Not Available | Negative | 1002034 - 1002903 | 32917.6 |
| hypothetical protein | DWZ06_04290 | Not Available | Positive | 1003169 - 1004836 | 64811.9 |
| xre family transcriptional regulator | DWZ06_04300 | Not Available | Positive | 1006352 - 1006555 | 7754.65 |
| duf262 domain-containing protein | DWZ06_04305 | Not Available | Positive | 1006623 - 1008362 | 68104.5 |
| dead/deah box helicase | DWZ06_04310 | Not Available | Positive | 1008429 - 1011131 | 102533.0 |
| sam-dependent dna methyltransferase | DWZ06_04315 | Not Available | Positive | 1011136 - 1012554 | 53156.6 |
| duf1016 domain-containing protein | DWZ06_04320 | Not Available | Positive | 1012558 - 1013688 | 44035.9 |
| restriction endonuclease subunit s | DWZ06_04325 | Not Available | Positive | 1013734 - 1015209 | 55519.0 |
| integrase | DWZ06_04330 | Not Available | Negative | 1015240 - 1016043 | 31367.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

