Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent oxidoreductase | DWZ06_04230 | Not Available | Positive | 991189 - 991929 | 28440.1 |
| chromosomal replication initiator protein dnaa | DWZ06_04235 | Not Available | Negative | 992014 - 993420 | 53559.4 |
| mce family protein | DWZ06_04240 | Not Available | Negative | 993758 - 994645 | 32711.7 |
| n-acetylmuramoyl-l-alanine amidase | DWZ06_04245 | Not Available | Negative | 994665 - 995894 | 46283.8 |
| transporter | DWZ06_04250 | Not Available | Positive | 996051 - 997010 | 35529.6 |
| pyridoxal phosphate-dependent aminotransferase | DWZ06_04255 | Not Available | Negative | 997102 - 998265 | 44343.0 |
| duf3737 family protein | DWZ06_04260 | Not Available | Negative | 998275 - 999141 | 33228.2 |
| alpha/beta hydrolase | DWZ06_04265 | Not Available | Negative | 999257 - 1000312 | 39348.2 |
| hypothetical protein | DWZ06_04270 | Not Available | Positive | 1000591 - 1000770 | 6327.56 |
| sugar o-acetyltransferase | DWZ06_04275 | Not Available | Negative | 1000792 - 1001367 | 20877.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

