Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l9 | DWZ06_04180 | Not Available | Positive | 977711 - 978154 | 16159.9 |
| hypothetical protein | DWZ06_04185 | Not Available | Negative | 978224 - 978916 | 26978.2 |
| hypothetical protein | DWZ06_04190 | Not Available | Negative | 979071 - 979271 | 6663.71 |
| long-chain fatty acid--coa ligase | DWZ06_04195 | Not Available | Negative | 979432 - 981105 | 63271.5 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | DWZ06_04200 | Not Available | Positive | 981211 - 982527 | 49152.8 |
| glycosyltransferase family 2 protein | DWZ06_04205 | Not Available | Positive | 982563 - 983588 | 39378.6 |
| radical sam protein | DWZ06_04210 | Not Available | Positive | 983676 - 984557 | 33132.9 |
| dihydroneopterin aldolase | DWZ06_04215 | Not Available | Negative | 984704 - 985072 | 13945.8 |
| hypothetical protein | DWZ06_04220 | Not Available | Positive | 985234 - 988206 | 110688.0 |
| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase | DWZ06_04225 | Not Available | Negative | 988299 - 990845 | 96377.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

