Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-glucuronidase | DWZ06_04130 | Not Available | Positive | 965835 - 967880 | 77308.3 |
| sialate o-acetylesterase | DWZ06_04135 | Not Available | Positive | 967908 - 969845 | 72324.6 |
| radical sam family heme chaperone hemw | DWZ06_04140 | Not Available | Negative | 969999 - 971129 | 43549.6 |
| elongation factor g | DWZ06_04145 | Not Available | Positive | 971366 - 973525 | 80535.6 |
| sensor histidine kinase | DWZ06_04150 | Not Available | Positive | 973788 - 975356 | 59676.4 |
| dna-binding response regulator | DWZ06_04155 | Not Available | Positive | 975358 - 976056 | 26811.6 |
| hypothetical protein | DWZ06_04160 | Not Available | Negative | 976132 - 976314 | 6168.02 |
| marr family transcriptional regulator | DWZ06_04165 | Not Available | Negative | 976423 - 976869 | 17228.0 |
| 30s ribosomal protein s6 | DWZ06_04170 | Not Available | Positive | 977079 - 977423 | 13428.3 |
| 30s ribosomal protein s18 | DWZ06_04175 | Not Available | Positive | 977426 - 977695 | 10561.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

