Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| plasmid mobilization relaxosome protein mobc | DWZ06_00360 | Not Available | Negative | 90974 - 91339 | 13955.8 |
| dna primase | DWZ06_00365 | Not Available | Negative | 91516 - 92454 | 35534.8 |
| helicase | DWZ06_00370 | Not Available | Negative | 92712 - 93917 | 47369.8 |
| hypothetical protein | DWZ06_00375 | Not Available | Negative | 94195 - 94584 | 14880.9 |
| site-specific integrase | DWZ06_00380 | Not Available | Negative | 94581 - 95804 | 46744.0 |
| tetracycline resistance ribosomal protection protein tet(q) | DWZ06_00385 | Not Available | Positive | 96212 - 98137 | 72226.1 |
| hybrid sensor histidine kinase/response regulator | DWZ06_00390 | Not Available | Positive | 98137 - 100455 | 87108.3 |
| sigma-54-dependent fis family transcriptional regulator | DWZ06_00395 | Not Available | Positive | 100448 - 101770 | 49691.2 |
| deaminase | DWZ06_00400 | Not Available | Positive | 102050 - 102472 | 16091.5 |
| rtec protein | DWZ06_00405 | Not Available | Positive | 102711 - 103316 | 23243.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

