Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hpaii family restriction endonuclease | DWZ06_04080 | Not Available | Negative | 950705 - 951793 | 41372.9 |
| hypothetical protein | DWZ06_04085 | Not Available | Positive | 951896 - 952135 | 9468.92 |
| linear amide c-n hydrolase | DWZ06_04090 | Not Available | Positive | 952294 - 953352 | 39406.4 |
| hypothetical protein | DWZ06_04095 | Not Available | Positive | 953587 - 954045 | 17637.3 |
| hsp20/alpha crystallin family protein | DWZ06_04100 | Not Available | Positive | 954310 - 954753 | 16943.0 |
| hybrid sensor histidine kinase/response regulator | DWZ06_04105 | Not Available | Negative | 954833 - 958894 | 155189.0 |
| hypothetical protein | DWZ06_04110 | Not Available | Negative | 958916 - 959107 | 7501.54 |
| glycoside hydrolase | DWZ06_04115 | Not Available | Positive | 959132 - 961639 | 94221.2 |
| glycoside hydrolase | DWZ06_04120 | Not Available | Positive | 961648 - 963231 | 60270.6 |
| glycosyhydrolase | DWZ06_04125 | Not Available | Positive | 963244 - 965838 | 99383.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

