Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 2 protein | DWZ06_04030 | Not Available | Positive | 939276 - 940481 | 46028.1 |
| response regulator | DWZ06_04035 | Not Available | Negative | 940485 - 940841 | 13485.5 |
| response regulator | DWZ06_04040 | Not Available | Positive | 940985 - 942835 | 71112.4 |
| endonuclease | DWZ06_04045 | Not Available | Positive | 942839 - 943900 | 40748.7 |
| hybrid sensor histidine kinase/response regulator | DWZ06_04050 | Not Available | Negative | 943905 - 945044 | 42228.6 |
| sdr family oxidoreductase | DWZ06_04055 | Not Available | Negative | 945054 - 945992 | 35503.6 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | DWZ06_04060 | Not Available | Positive | 946113 - 946937 | 29140.4 |
| [acyl-carrier-protein] s-malonyltransferase | DWZ06_04065 | Not Available | Positive | 947064 - 947951 | 31271.7 |
| phospholipase | DWZ06_04070 | Not Available | Positive | 948077 - 948862 | 29317.4 |
| alpha-amylase | DWZ06_04075 | Not Available | Positive | 948879 - 950576 | 64769.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

