Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| capsule biosynthesis protein | DWZ06_03880 | Not Available | Negative | 905513 - 908005 | 92296.4 |
| xylose isomerase | DWZ06_03885 | Not Available | Negative | 908245 - 909561 | 49026.8 |
| carbohydrate kinase | DWZ06_03890 | Not Available | Negative | 909654 - 911147 | 53505.7 |
| nudix hydrolase | DWZ06_03895 | Not Available | Negative | 911320 - 912054 | 28552.5 |
| response regulator | DWZ06_03900 | Not Available | Positive | 912410 - 912775 | 14101.4 |
| sugar transferase | DWZ06_03905 | Not Available | Positive | 912782 - 913957 | 44978.8 |
| hypothetical protein | DWZ06_03910 | Not Available | Positive | 913994 - 914857 | 32645.0 |
| hypothetical protein | DWZ06_03915 | Not Available | Positive | 914863 - 917010 | 82564.8 |
| o-antigen ligase domain-containing protein | DWZ06_03920 | Not Available | Positive | 917014 - 918474 | 54858.9 |
| glycosyltransferase family 2 protein | DWZ06_03925 | Not Available | Positive | 918455 - 919360 | 34487.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

