Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | DWZ06_03830 | Not Available | Positive | 894909 - 896426 | 59232.0 |
| deda family protein | DWZ06_03835 | Not Available | Positive | 896434 - 897060 | 23001.3 |
| thiol peroxidase | DWZ06_03840 | Not Available | Positive | 897129 - 897632 | 17976.7 |
| gdp-l-fucose synthase | DWZ06_03845 | Not Available | Negative | 897781 - 898857 | 40581.7 |
| gdp-mannose 4,6-dehydratase | DWZ06_03850 | Not Available | Negative | 898857 - 899939 | 41218.5 |
| mannose-1-phosphate guanylyltransferase | DWZ06_03855 | Not Available | Negative | 900115 - 901179 | 40506.4 |
| undecaprenyl-phosphate glucose phosphotransferase | DWZ06_03860 | Not Available | Positive | 901293 - 902696 | 54127.9 |
| glucose-1-phosphate thymidylyltransferase | DWZ06_03865 | Not Available | Positive | 902732 - 903619 | 32723.6 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | DWZ06_03870 | Not Available | Positive | 903619 - 904188 | 21738.7 |
| chain-length determining protein | DWZ06_03875 | Not Available | Negative | 904366 - 905505 | 41526.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

