Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_03680 | Not Available | Negative | 865008 - 865265 | 9838.79 |
| hypothetical protein | DWZ06_03685 | Not Available | Positive | 865742 - 865993 | 9611.98 |
| hypothetical protein | DWZ06_03690 | Not Available | Negative | 866216 - 866464 | 9392.94 |
| putative toxin-antitoxin system toxin component, pin family | DWZ06_03695 | Not Available | Negative | 866490 - 866897 | 15740.8 |
| hypothetical protein | DWZ06_03700 | Not Available | Negative | 866911 - 867126 | 8582.31 |
| hypothetical protein | DWZ06_03705 | Not Available | Negative | 867315 - 868127 | 30774.5 |
| glycosyltransferase | DWZ06_03710 | Not Available | Negative | 868132 - 868845 | 27614.7 |
| glycosyltransferase | DWZ06_03715 | Not Available | Negative | 868870 - 869958 | 41455.1 |
| glycosyltransferase | DWZ06_03720 | Not Available | Negative | 870304 - 871341 | 40186.1 |
| alpha-1,2-fucosyltransferase | DWZ06_03725 | Not Available | Negative | 871338 - 872138 | 30674.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

