Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-2-hydroxyacid dehydrogenase | DWZ06_03625 | Not Available | Negative | 852513 - 853469 | 34402.8 |
| replication-associated recombination protein a | DWZ06_03630 | Not Available | Negative | 853640 - 854917 | 47207.0 |
| hypothetical protein | DWZ06_03635 | Not Available | Positive | 855157 - 857232 | 78193.5 |
| quinoprotein amine dehydrogenase | DWZ06_03640 | Not Available | Positive | 857264 - 858340 | 39490.4 |
| duf4248 domain-containing protein | DWZ06_03645 | Not Available | Negative | 858564 - 858782 | 8477.29 |
| dna-binding protein | DWZ06_03650 | Not Available | Positive | 859134 - 859622 | 17535.0 |
| n-acetylmuramoyl-l-alanine amidase | DWZ06_03655 | Not Available | Positive | 859882 - 860298 | 15874.4 |
| hypothetical protein | DWZ06_03660 | Not Available | Positive | 860469 - 860783 | 13007.3 |
| toprim domain-containing protein | DWZ06_03665 | Not Available | Negative | 861172 - 862695 | 58032.8 |
| dna primase | DWZ06_03670 | Not Available | Negative | 862968 - 863341 | 14885.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

