Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s ribosomal rna | Not Available | Not Available | Positive | 83823 - 85356 | Not Available |
| sigma-54-dependent fis family transcriptional regulator | DWZ06_00320 | Not Available | Negative | 83069 - 84391 | 49707.2 |
| 23s ribosomal rna | Not Available | Not Available | Positive | 85778 - 88670 | Not Available |
| radical sam mobile pair protein b | DWZ06_00330 | Not Available | Negative | 85746 - 86621 | 34028.9 |
| radical sam mobile pair protein a | DWZ06_00335 | Not Available | Negative | 86618 - 87286 | 26030.2 |
| mbl fold metallo-hydrolase | DWZ06_00340 | Not Available | Negative | 87283 - 88059 | 28663.6 |
| arac family transcriptional regulator | DWZ06_00345 | Not Available | Positive | 88190 - 89089 | 35603.9 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 88749 - 88859 | Not Available |
| arac family transcriptional regulator | DWZ06_00350 | Not Available | Positive | 89349 - 90008 | 25862.6 |
| plasmid mobilization relaxosome protein mobc | DWZ06_00355 | Not Available | Negative | 90030 - 90977 | 35770.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

