Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnfabcdge type electron transport complex subunit d | DWZ06_03525 | Not Available | Negative | 828295 - 829284 | 35358.5 |
| electron transport complex subunit rsxc | DWZ06_03530 | Not Available | Negative | 829299 - 830636 | 47119.8 |
| fe-s cluster domain-containing protein | DWZ06_03535 | Not Available | Negative | 830676 - 831629 | 32597.8 |
| rsec/mucc family positive regulator of sigma(e) | DWZ06_03540 | Not Available | Negative | 831650 - 832078 | 15752.6 |
| threonine ammonia-lyase | DWZ06_03545 | Not Available | Negative | 832257 - 833453 | 42410.4 |
| dmt family transporter | DWZ06_03550 | Not Available | Negative | 833650 - 834564 | 33454.3 |
| mfs transporter | DWZ06_03555 | Not Available | Negative | 834596 - 835786 | 43394.0 |
| glutamate decarboxylase | DWZ06_03560 | Not Available | Positive | 836044 - 837492 | 54702.8 |
| glutaminase | DWZ06_03565 | Not Available | Positive | 837558 - 838520 | 34758.9 |
| copper homeostasis protein cutc | DWZ06_03570 | Not Available | Positive | 838821 - 839684 | 31395.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

